GgaEX0021332 @ galGal3
Exon Skipping
Gene
ENSGALG00000014624 | F1N8P2_CHICK
Description
NA
Coordinates
chr10:19424548-19428635:-
Coord C1 exon
chr10:19428453-19428635
Coord A exon
chr10:19426791-19426908
Coord C2 exon
chr10:19424548-19424666
Length
118 bp
Sequences
Splice sites
3' ss Seq
TCATTGCATGTTTTTTTCAGATA
3' ss Score
8.69
5' ss Seq
CAAGTAAGG
5' ss Score
7.66
Exon sequences
Seq C1 exon
CATGGCACATATATTAAAGACGCTCAACAGCTGGTTCTGGTGGGAGAATATTTGGATGCCAATCAATTGCACATGGGCAGATTTTGTAGACCGTGATGGCCTTGTCTTTCCAAAACCACAACAGTTGTATGCCACAATACCATATGCTTTTGTATTGCTGATTATCCGATTCTTCACTGAAAG
Seq A exon
ATACATTGCTATTCCTCTAGCAAAAGCCTTAGGTATAAAGAATGTAAGACGTGTGAAGCCGCAGCCTAATCCTGTTTTAGAGAGTTATTTCCGGGAGTGCTCAAGACATCCATCTCAA
Seq C2 exon
TCAGAGATTCAAGGCCTTGCCAAAAAGTGCAACTGCACGGTCCATCTGGTGGAAAAGTGGTTTAGGAGACGACGAAACCTTGAGATCCCAACGGTGCTTCGGAAATTCCAGGAAGCTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014624-'1-3,'1-2,3-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0004624=Homeobox=PU(47.3=65.0)
C2:
PF0004624=Homeobox=PD(49.1=67.5),PF0379811=TRAM_LAG1_CLN8=PU(4.3=12.5)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTGGTTCTGGTGGGAGAAT
R:
AAGCACCGTTGGGATCTCAAG
Band lengths:
254-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]