BtaEX6076497 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006987 | LASS3
Description
Bos taurus ceramide synthase 3 (CERS3), mRNA. [Source:RefSeq mRNA;Acc:NM_001099389]
Coordinates
chr21:6285022-6307700:+
Coord C1 exon
chr21:6285022-6285195
Coord A exon
chr21:6300121-6300238
Coord C2 exon
chr21:6307582-6307700
Length
118 bp
Sequences
Splice sites
3' ss Seq
TTTTGTTTACATTTTCATAGGTT
3' ss Score
8.84
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
AATGTTTCAGACATTTAAAGAATGGTTTTGGTTGGAAAGATTCTGGCTTCCTCCAACAGTAAAATGGTCAGATCTTGAAGATCACGATGGACTCATCTTTGTGAAGCCCTCTCATTTATATATGACCATTCCATATGCTTTTGTCTTGATAATTATCAGACATTTTTTTCAAAA
Seq A exon
GTTTATTGCTTCACCTCTAGCAAAAACATTTGGCATTAAAGAGGAAGTTCGAAAGAAGATTATACCAAATTCTGTTTTAGAGAATTTTTTCAAACATTCCACAAAGAAACCATCTCAA
Seq C2 exon
ACTGATATTTATGGACTGGCAAAGAAGTGTAACTTGACAGAGCGCCAGGTTGAAAGATGGTTTAGGAGACGGCAGAATCAAGATAGGCCTTGCAGGATGAAGAAATTCCAGGAATCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006987-'1-3,'1-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083906=TRAM1=PU(52.6=34.5)
A:
PF083906=TRAM1=PD(44.7=42.5),PF0004624=Homeobox=PU(34.0=40.0)
C2:
PF0004624=Homeobox=PD(61.7=72.5),PF0379811=TRAM_LAG1_CLN8=PU(2.6=12.5)
Main Skipping Isoform:
ENSBTAT00000052579fB3783
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AGATTCTGGCTTCCTCCAACAG
R:
TTTCTTCATCCTGCAAGGCCT
Band lengths:
242-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]