DreEX0021062 @ danRer10
Exon Skipping
Gene
ENSDARG00000036337 | cers3b
Description
ceramide synthase 3b [Source:ZFIN;Acc:ZDB-GENE-080220-32]
Coordinates
chr18:7351595-7358011:+
Coord C1 exon
chr18:7351595-7351762
Coord A exon
chr18:7351955-7352072
Coord C2 exon
chr18:7357893-7358011
Length
118 bp
Sequences
Splice sites
3' ss Seq
GTTCTTTCTCCATTAAATAGGCT
3' ss Score
7.19
5' ss Seq
CAGGTAACT
5' ss Score
8.63
Exon sequences
Seq C1 exon
GGCGATGCTCAGTGAGTGGTTTTGGTGGGACCGGCTGTGGTTGCCGAGGCCGGTGACGTGGGCGGATCTACAGGACAGTGAGGGGTGTGTCTACGCACGTGCCTCCCACTTGTACATCATTCTACCTGTTGCAGTGCTGCTGCTCGGCTTAAGAGCATTATATGAAAG
Seq A exon
GCTGATAGCAGTGCCACTCGCTCAGGCTCTTGGAGTTAAAGACAAAATTCGCAAGAGAGCATCACACAACCCACTACTGGAAACATACTACAGAACACACTCTAAACACCCAACACAG
Seq C2 exon
GCGGATGTAAAAGGTGTGTGTAAAAAGCTGGGCTGGTCAGAAAGGCAGGTGGAGCGTTGGTTCCGCCAGAGGAGGAATCAAGACAGACCCGGAGTACAGAAGAAATTCAAAGAAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000036337_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF101834=ESSS=PU(29.1=75.0),PF0004624=Homeobox=PU(41.5=55.0)
C2:
PF101834=ESSS=FE(37.9=100),PF0004624=Homeobox=PD(54.7=72.5),PF0379811=TRAM_LAG1_CLN8=PU(2.6=12.5)
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCGATGCTCAGTGAGTGGTTT
R:
TTGATTCCTCCTCTGGCGGAA
Band lengths:
248-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]