MmuEX0026158 @ mm10
Exon Skipping
Gene
ENSMUSG00000030510 | Cers3
Description
ceramide synthase 3 [Source:MGI Symbol;Acc:MGI:2681008]
Coordinates
chr7:66764175-66779669:+
Coord C1 exon
chr7:66764175-66764348
Coord A exon
chr7:66773590-66773704
Coord C2 exon
chr7:66779551-66779669
Length
115 bp
Sequences
Splice sites
3' ss Seq
CTTCTTCTCATATTTTGTAGGTT
3' ss Score
10.61
5' ss Seq
CATGTAAGT
5' ss Score
8.31
Exon sequences
Seq C1 exon
AATGTTTCAGACGTTTAGAAAATGGTTCTGGTCGGAGAGATACTGGCTTCCTCCAACAATAAAGTGGTCAGACCTGGAAGATCATGATGGGCTTGTCTTCGTGAAAGCTTCCCACTTATACATCACAATTCCATATGCCTTTCTTTTAATGGTCGTCAGATACTTCTTTGAAAA
Seq A exon
GTTTGTTGCTACACCTCTAGCAAATGCACTTGGCATTAAAAAGACACAGCACAAAATTAAACCAAATGCCATCTTAGAGAATTTTTTCAAGCATTCCACAAGCAAACCATCACAT
Seq C2 exon
ACTGATATTTATGGACTGGCAAAGAAGTGTAACTTGACAGAGCGCCAGGTTGAAAGATGGCTTAGGATTCGGCAGAAGCAAAACAAGCCTTGCAGGCTGCAGAAATTCCAGGAGTCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030510-'3-4,'3-3,5-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0004624=Homeobox=PU(51.6=82.1)
C2:
PF0004624=Homeobox=PD(45.2=70.0),PF0379811=TRAM_LAG1_CLN8=PU(2.6=12.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GTCGGAGAGATACTGGCTTCCT
R:
TCCTGGAATTTCTGCAGCCTG
Band lengths:
257-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types