GgaEX0022930 @ galGal3
Exon Skipping
Gene
ENSGALG00000015630 | EDIL3
Description
NA
Coordinates
chrZ:60892895-60955301:+
Coord C1 exon
chrZ:60892895-60893010
Coord A exon
chrZ:60927576-60927605
Coord C2 exon
chrZ:60955173-60955301
Length
30 bp
Sequences
Splice sites
3' ss Seq
CACTCTCCCCATTTGCACAGCCT
3' ss Score
5.58
5' ss Seq
CAGGTATGC
5' ss Score
9.37
Exon sequences
Seq C1 exon
CTCCAATCCCTGCAAAAATGGTGGCATCTGTCTGTCGGGGTTGAATGATGACTTTTACTCATGCGAGTGTCCTGAAGGCTTCACAGATCCCAACTGTTCTAGTGTTGTGGAGGTTG
Seq A exon
CCTCCATTGAAGAGGAACCAACTTCAGCAG
Seq C2 exon
GACCCTGCCTTCCTAATCCATGCCATAATGGTGGGATGTGTGAAATTAGTGAAGCGTACCGAGGCGACACATTCATAGGATATGTTTGTAAATGTCCAGAAGGTTTTAATGGGATTCACTGCCAGCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015630-'1-4,'1-2,2-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0000822=EGF=WD(100=88.4),PF0000822=EGF=PU(7.9=7.0)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGGTGGCATCTGTCTGTCG
R:
GCATGGATTAGGAAGGCAGGG
Band lengths:
123-153
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]