BtaEX0012408 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000044033 | EDIL3
Description
EGF-like repeats and discoidin I-like domains 3 [Source:HGNC Symbol;Acc:HGNC:3173]
Coordinates
chr7:86432676-86510232:-
Coord C1 exon
chr7:86510104-86510232
Coord A exon
chr7:86476089-86476118
Coord C2 exon
chr7:86432676-86432804
Length
30 bp
Sequences
Splice sites
3' ss Seq
TCTCTTTTCCTCTATCATAGCAT
3' ss Score
8.7
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
Exon sequences
Seq C1 exon
GTGATATTTGTGATCCCAATCCTTGTGAAAATGGAGGTATCTGCTTGCCAGGATTGTCTGATGGTTCCTTTTCCTGCAAGTGTCCAGATGGCTTCACAGGTCCCAACTGTTCTAGTGTTGTGGAGGTTG
Seq A exon
CATCAGATGATGAAGAGCCAACTTCAGCAG
Seq C2 exon
GTCCCTGCACTCCTAATCCATGCCATAATGGAGGAACCTGCGAAATAAGTGAAGCGTACCGAGGAGATACATTCATAGGCTATGTTTGTAAATGTCCCCGAGGATTTAATGGGATTCACTGTCAGCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000044033_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=WD(100=75.0)
A:
NO
C2:
PF0000822=EGF=WD(100=86.4),PF0000822=EGF=PU(7.9=6.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTTGCCAGGATTGTCTGA
R:
GCATGGATTAGGAGTGCAGGG
Band lengths:
112-142
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development