MmuEX0016247 @ mm9
Exon Skipping
Gene
ENSMUSG00000034488 | Edil3
Description
EGF-like repeats and discoidin I-like domains 3 [Source:MGI Symbol;Acc:MGI:1329025]
Coordinates
chr13:89084425-89182165:+
Coord C1 exon
chr13:89084425-89084553
Coord A exon
chr13:89117360-89117389
Coord C2 exon
chr13:89182037-89182165
Length
30 bp
Sequences
Splice sites
3' ss Seq
TTCCCTTCCCTCTATTATAGCAT
3' ss Score
10.7
5' ss Seq
CAGGTAAAC
5' ss Score
7.82
Exon sequences
Seq C1 exon
GTGACATTTGCAACCCGAACCCCTGTGAAAATGGTGGCATCTGTCTGTCAGGACTGGCTGATGATTCCTTTTCCTGTGAGTGTCCAGAAGGCTTCGCAGGTCCGAACTGCTCTAGTGTTGTGGAGGTTG
Seq A exon
CATCAGATGAAGAAAAGCCTACTTCAGCAG
Seq C2 exon
GTCCCTGCATCCCTAACCCATGCCATAACGGAGGAACCTGTGAGATAAGCGAAGCCTATCGAGGAGACACATTCATAGGCTATGTTTGTAAATGTCCTCGGGGATTTAATGGGATTCACTGTCAGCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034488_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=WD(100=75.0)
A:
NO
C2:
PF0000822=EGF=WD(100=86.4),PF0000822=EGF=PU(7.9=6.8)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCTGTCAGGACTGGCTGAT
R:
GTTCCTCCGTTATGGCATGGG
Band lengths:
125-155
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: