RnoEX0030805 @ rn6
Exon Skipping
Gene
ENSRNOG00000033064 | Edil3
Description
EGF like repeats and discoidin domains 3 [Source:RGD Symbol;Acc:1588887]
Coordinates
chr2:17731020-17835389:+
Coord C1 exon
chr2:17731020-17731148
Coord A exon
chr2:17778871-17778900
Coord C2 exon
chr2:17835261-17835389
Length
30 bp
Sequences
Splice sites
3' ss Seq
CTTCCTTCTCTCTATTATAGCAT
3' ss Score
11.53
5' ss Seq
CAGGTAAAC
5' ss Score
7.82
Exon sequences
Seq C1 exon
GGGACATTTGCAACCCCAATCCCTGTGAAAATGGTGGCATCTGTCTGTCAGGATTGGCGGATGATTCCTTTTCCTGTGAGTGTCCAGACGGCTTCACAGATCCAAACTGCTCTAGTGTTGTGGAGGTTG
Seq A exon
CATCAGATGAAGAAAAGCCTACTTCAGCAG
Seq C2 exon
GTCCCTGCATCCCCAATCCATGCCATAATGGAGGAACTTGTGAGATAAGTGAAGCATATCGGGGAGACACATTCATAGACTATGTTTGTAAATGTCCCCAGGGATTTAATGGGATTCACTGTCAGCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000033064-'7-4,'7-3,8-4
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=WD(100=75.0)
A:
NO
C2:
PF0000822=EGF=WD(100=86.4),PF0000822=EGF=PU(7.9=6.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTGTCAGGATTGGCGGATG
R:
TATGGCATGGATTGGGGATGC
Band lengths:
114-144
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]