GgaEX0022930 @ galGal4
Exon Skipping
Gene
ENSGALG00000015630 | EDIL3
Description
EGF-like repeats and discoidin I-like domains 3 [Source:HGNC Symbol;Acc:HGNC:3173]
Coordinates
chrZ:62061312-62122826:+
Coord C1 exon
chrZ:62061312-62061440
Coord A exon
chrZ:62096241-62096270
Coord C2 exon
chrZ:62122698-62122826
Length
30 bp
Sequences
Splice sites
3' ss Seq
CACTCTCCCCATTTGCACAGCCT
3' ss Score
5.58
5' ss Seq
CAGGTATGC
5' ss Score
9.37
Exon sequences
Seq C1 exon
GGGACTTGTGTGACTCCAATCCCTGCAAAAATGGTGGCATCTGTCTGTCGGGGTTGAATGATGACTTTTACTCATGCGAGTGTCCTGAAGGCTTCACAGATCCCAACTGTTCTAGTGTTGTGGAGGTTG
Seq A exon
CCTCCATTGAAGAGGAACCAACTTCAGCAG
Seq C2 exon
GACCCTGCCTTCCTAATCCATGCCATAATGGTGGGATGTGTGAAATTAGTGAAGCGTACCGAGGCGACACATTCATAGGATATGTTTGTAAATGTCCAGAAGGTTTTAATGGGATTCACTGCCAGCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015630-'2-7,'2-3,3-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=WD(100=75.0)
A:
NO
C2:
PF0000822=EGF=WD(100=86.4),PF0000822=EGF=PU(7.9=6.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGGTGGCATCTGTCTGTCG
R:
GCATGGATTAGGAAGGCAGGG
Band lengths:
123-153
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]