HsaEX0021588 @ hg19
Exon Skipping
Gene
ENSG00000164176 | EDIL3
Description
EGF-like repeats and discoidin I-like domains 3 [Source:HGNC Symbol;Acc:3173]
Coordinates
chr5:83476211-83550030:-
Coord C1 exon
chr5:83549902-83550030
Coord A exon
chr5:83525673-83525702
Coord C2 exon
chr5:83476211-83476339
Length
30 bp
Sequences
Splice sites
3' ss Seq
ACCTTTTCCTCTTATCATAGCAT
3' ss Score
7.57
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
Exon sequences
Seq C1 exon
GTGATATTTGTGATCCCAATCCATGTGAAAATGGAGGTATCTGTTTGCCAGGATTGGCTGATGGTTCCTTTTCCTGTGAGTGTCCAGATGGCTTCACAGACCCCAACTGTTCTAGTGTTGTGGAGGTTG
Seq A exon
CATCAGATGAAGAAGAACCAACTTCAGCAG
Seq C2 exon
GTCCCTGCACTCCTAATCCATGCCATAATGGAGGAACCTGTGAAATAAGTGAAGCATACCGAGGGGATACATTCATAGGCTATGTTTGTAAATGTCCCCGAGGATTTAATGGGATTCACTGTCAGCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000164176-'2-4,'2-2,3-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show PDB structure
Features
Disorder rate (Iupred):
C1=0.000 A=0.091 C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=WD(100=75.0)
A:
NO
C2:
PF0000822=EGF=WD(100=86.4),PF0000822=EGF=PU(7.9=6.8)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCAGATGGCTTCACAGACC
R:
TCCCCTCGGTATGCTTCACTT
Band lengths:
115-145
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)