DreEX0028925 @ danRer10
Exon Skipping
Gene
ENSDARG00000093413 | edil3
Description
EGF-like repeats and discoidin I-like domains 3 [Source:ZFIN;Acc:ZDB-GENE-060503-366]
Coordinates
chr5:46268724-46382767:-
Coord C1 exon
chr5:46382407-46382767
Coord A exon
chr5:46296365-46296394
Coord C2 exon
chr5:46268724-46268852
Length
30 bp
Sequences
Splice sites
3' ss Seq
TTCCTCATATCCCTCTATAGCAG
3' ss Score
7.24
5' ss Seq
CAGGTGGGA
5' ss Score
6.71
Exon sequences
Seq C1 exon
GCGCTACACTGACCGTCCGCCGCGCGCAATCACCGTTTGATCGGGACCCGCGCGGAGCCTCTCCGTTATCTCGCCGCGCACCACTGCAGCAGAAGGGCAAGAGGAACTCCAAAGAGGATCATTTAGTTCATCTCCGTTGACCCTTTCTGGGAGAAAAACACGGACTTCACTGACACCTGTCCTGGGAGATACTTCGTCGAAGACCTTTGCGTGTAACTGAGTGAAAGAAAGAAGTTTTGTCCGTCGCTGCCGCTGAACGTTCGTAACCTTGGAGCTCGTAACCGCTGTTTGGTGAGGATGGGACCGTTGCTCGTCTCCATCGCCCTCTGCGTGCACCTCGCTGTCCCGCATCTCGTCAAAG
Seq A exon
CAGCAGATGGTGAGGATCCAACTTCAGCAG
Seq C2 exon
GACCCTGCCATCCAAACCCTTGCCACAATGGAGGCATCTGTGAAATCAGCGAAACGTTCAGAGGCGACACATTCATTGGATATGTCTGCAAGTGTCCATCAGGATTCAATGGGATCCACTGCCAGCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000093413_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=50%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0000822=EGF=WD(100=88.4),PF0000822=EGF=PU(5.3=4.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGTAACCGCTGTTTGGTGAG
R:
CCTCCATTGTGGCAAGGGTTT
Band lengths:
120-150
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]