GgaEX0023384 @ galGal3
Exon Skipping
Gene
ENSGALG00000015908 | COL12A1
Description
NA
Coordinates
chr3:83570225-83582783:+
Coord C1 exon
chr3:83570225-83570381
Coord A exon
chr3:83580575-83580844
Coord C2 exon
chr3:83582722-83582783
Length
270 bp
Sequences
Splice sites
3' ss Seq
TGTTGTGGTCTGTCTTGCAGAAC
3' ss Score
11.2
5' ss Seq
ATGGTGAGC
5' ss Score
8.27
Exon sequences
Seq C1 exon
GCAGGAGGTGAAACTAAGGAATTGACTGTGAAAGGTGACACTACCTCTAAAGTGCTGAAAGGTTTAGATGAAGCCACTAGGTATGCATTGACTGTGTCTGCCTTGTACGCCTCTGGAGCAGGAGAAGCCCTTTCTGGAGAGGGAGAAACACTTGAAG
Seq A exon
AACGTGGTTCGCCTCGCAATTTGATTACCACAGACATAACTGACACAACAGTTGGGTTATCATGGACACCAGCTCCAGGAACAGTTAATAATTATAGGATAGTGTGGAAATCACTTTATGATGATACAATGGGAGAGAAGAGAGTCCCTGGAAATACGGTGGATGCAGTGCTGGATGGCTTGGAGCCAGAGACTAAATACAGGATTTCAGTATATGCAGCCTACAGCAGTGGAGAAGGAGATCCTGTAGAAGGAGAGGCCTTTACTGATG
Seq C2 exon
TGTCACAAAGTGCCAGGACTGTGACAGTAGACAACGAGACAGAGAATACAATGAGAGTTTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015908-'18-19,'18-18,19-19
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.451 A=0.352 C2=0.534
Domain overlap (PFAM):
C1:
PF0004116=fn3=PD(53.2=79.2)
A:
PF0004116=fn3=WD(100=87.9)
C2:
PF0004116=fn3=WD(100=90.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGGAGGTGAAACTAAGGAA
R:
ACTCTCATTGTATTCTCTGTCTCGT
Band lengths:
215-485
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]