RnoEX0022796 @ rn6
Exon Skipping
Gene
ENSRNOG00000058470 | Col12a1
Description
collagen type XII alpha 1 chain [Source:RGD Symbol;Acc:2374]
Coordinates
chr8:87119514-87132451:-
Coord C1 exon
chr8:87132179-87132451
Coord A exon
chr8:87122797-87123069
Coord C2 exon
chr8:87119514-87119780
Length
273 bp
Sequences
Splice sites
3' ss Seq
TCTTTTAATCTCTCTTCCAGAAC
3' ss Score
11.23
5' ss Seq
AATGTAGGT
5' ss Score
5.12
Exon sequences
Seq C1 exon
TTAGAGGGAATCCAAGAGACTTAAGAGTTTCTGATGCCACGACATCAACGCTGAAGTTGACTTGGAGTGGGGCCCCAGGAAAAGTGAAGCAGTATCTTGTCACATACACCCCAGCAGCAGGAGGTGAAACTCAGGAGGTCACTGTGAGAGGGGATACAACCACCACGGTGTTGAGGAACTTGAAGGAAGGGACACAGTACGACTTATCTGTGACAGCACTGTATGCGTCTGGGGCTGGTGAGGCCCTTTCTGGAAAAGGGACAACACTTGAAG
Seq A exon
AACGTGGTTCACCTCAAAATCTAGTTACCAAAGACATCACAGACACATCAATCGGGGCCTATTGGACATCTGCTCCAGGGATGGTTCGAGGGTACAGGGTCTCATGGAAGTCGCTTTATGACGATATTGAGGCCGGAGAGAAAACTCTTCCTGGAGATGCAATTCACACTATGATTGAGAATCTGCAGCCAGAGACCAAGTACAAAATTTCAGTTTTTGCAACTTACAGCAGTGGAGAAGGAGAGCCGGTGACTGGAGATGCCACAACTGAAT
Seq C2 exon
TATCTCAAGACTCCAAAATCTTAAAAGTGGATGAAGAAACAGAACACACAATGAGAGTTACCTGGAAAGCAGCGCCGGGGAAAGTCATCAACTACCGCGTTGTGTATCGCCCTCAAGGGGGTGGGAGACAGATGGTTGCTAAGGTTCCACCCACGGTCACTTCAACAGTGCTAAAGAGGCTTCAACCCCAGACCACATATGACATCACAGTTCTCCCAATGTATAAGACAGGAGAAGGAAAGCTTAGACAAGGATCAGGAACAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000058470-'24-28,'24-27,25-28
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.478 A=0.304 C2=0.478
Domain overlap (PFAM):
C1:
PF0004116=fn3=WD(100=87.0)
A:
PF0004116=fn3=WD(100=88.0)
C2:
PF0004116=fn3=WD(100=87.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGTCACTGTGAGAGGGGAT
R:
GTGGGTGGAACCTTAGCAACC
Band lengths:
293-566
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]