GgaEX0023385 @ galGal3
Exon Skipping
Gene
ENSGALG00000015908 | COL12A1
Description
NA
Coordinates
chr3:83580575-83585424:+
Coord C1 exon
chr3:83580575-83580844
Coord A exon
chr3:83582722-83582988
Coord C2 exon
chr3:83585232-83585424
Length
267 bp
Sequences
Splice sites
3' ss Seq
CATGTTTTTATCCTGAAAAGTGT
3' ss Score
4.4
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
AACGTGGTTCGCCTCGCAATTTGATTACCACAGACATAACTGACACAACAGTTGGGTTATCATGGACACCAGCTCCAGGAACAGTTAATAATTATAGGATAGTGTGGAAATCACTTTATGATGATACAATGGGAGAGAAGAGAGTCCCTGGAAATACGGTGGATGCAGTGCTGGATGGCTTGGAGCCAGAGACTAAATACAGGATTTCAGTATATGCAGCCTACAGCAGTGGAGAAGGAGATCCTGTAGAAGGAGAGGCCTTTACTGATG
Seq A exon
TGTCACAAAGTGCCAGGACTGTGACAGTAGACAACGAGACAGAGAATACAATGAGAGTTTCATGGCAGCCCTCACCTGGGAAGGTCTTGTCTTACCGCGTGTACTACCGACCACGCAGTGGAGGAAGGCAGATGTTTGGAAAAGTAAATGCTTCTGCCACAAGCATAGTGTTGAAGAGACTTAAGCCTCGAACTACATATGACCTCAGTGTTGTTCCAATTTATGATTTTGGACAAGGAAAATCAAGAAAAGCAGAAGGAACAACAG
Seq C2 exon
CCTCTCCCTTTAAGCCGCCTAGAAATTTGAGAACTTCTGATTCAACTATGTCCAGTTTCCGAGTAACCTGGGAGCCGGCCCCTGGGCGAGTGAAGGGGTACAAAGTTACTTTCCACCCTACTGAAGATGACAGGAATCTTGGAGAATTAATTGTGGGACCCTATGACAGCACTGTGGTTTTGGAGGAACTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015908-'19-22,'19-19,22-22
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.352 A=0.340 C2=0.385
Domain overlap (PFAM):
C1:
PF0004116=fn3=WD(100=87.9)
A:
PF0004116=fn3=WD(100=90.0)
C2:
PF0004116=fn3=PU(74.1=92.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATACGGTGGATGCAGTGCTG
R:
CCTCCAAAACCACAGTGCTGT
Band lengths:
304-571
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]