RnoEX0022797 @ rn6
Exon Skipping
Gene
ENSRNOG00000058470 | Col12a1
Description
collagen type XII alpha 1 chain [Source:RGD Symbol;Acc:2374]
Coordinates
chr8:87118770-87123069:-
Coord C1 exon
chr8:87122797-87123069
Coord A exon
chr8:87119514-87119780
Coord C2 exon
chr8:87118770-87118962
Length
267 bp
Sequences
Splice sites
3' ss Seq
TACTATTCTGTGTTTCACAGTAT
3' ss Score
7.59
5' ss Seq
CAGGTATAC
5' ss Score
7.48
Exon sequences
Seq C1 exon
AACGTGGTTCACCTCAAAATCTAGTTACCAAAGACATCACAGACACATCAATCGGGGCCTATTGGACATCTGCTCCAGGGATGGTTCGAGGGTACAGGGTCTCATGGAAGTCGCTTTATGACGATATTGAGGCCGGAGAGAAAACTCTTCCTGGAGATGCAATTCACACTATGATTGAGAATCTGCAGCCAGAGACCAAGTACAAAATTTCAGTTTTTGCAACTTACAGCAGTGGAGAAGGAGAGCCGGTGACTGGAGATGCCACAACTGAAT
Seq A exon
TATCTCAAGACTCCAAAATCTTAAAAGTGGATGAAGAAACAGAACACACAATGAGAGTTACCTGGAAAGCAGCGCCGGGGAAAGTCATCAACTACCGCGTTGTGTATCGCCCTCAAGGGGGTGGGAGACAGATGGTTGCTAAGGTTCCACCCACGGTCACTTCAACAGTGCTAAAGAGGCTTCAACCCCAGACCACATATGACATCACAGTTCTCCCAATGTATAAGACAGGAGAAGGAAAGCTTAGACAAGGATCAGGAACAACAG
Seq C2 exon
CTTCTCGATTTAAATCGCCGAGAAACCTCAAAACTTCTGACCCAACAATGTCAAGTTTCCGAGTGACTTGGGAGCCTGCCCCTGGGGAAGTGAAAGGTTACAAAGTCACCTTTCACCCTACAGGTGACGACAGAAGACTTGGGGAGTTGGTCCTTGGACCATATGACAACACAGTTGTCTTGGAGGAGCTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000058470-'25-30,'25-28,28-30
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.304 A=0.478 C2=0.385
Domain overlap (PFAM):
C1:
PF0004116=fn3=WD(100=88.0)
A:
PF0004116=fn3=WD(100=87.8)
C2:
PF0004116=fn3=PU(74.1=92.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACACATCAATCGGGGCCTA
R:
GCTCCCAAGTCACTCGGAAAC
Band lengths:
308-575
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]