GgaEX0023631 @ galGal3
Exon Skipping
Gene
ENSGALG00000016037 | SPAG1
Description
NA
Coordinates
chr2:134056588-134060318:+
Coord C1 exon
chr2:134056588-134056692
Coord A exon
chr2:134057074-134057173
Coord C2 exon
chr2:134060166-134060318
Length
100 bp
Sequences
Splice sites
3' ss Seq
GTAATTGTAACTTCTTTTAGGAG
3' ss Score
7.06
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
Exon sequences
Seq C1 exon
CTGCTGCAAAACTGAAAAGCGAAGGAAACGAGTTATTTAAGAGTGGGCAGTTTGGAGAAGCTGTGCCCAAATACTCGGAAGCAATTGAGTATGTCATCAGTGTAG
Seq A exon
GAGAACGAAGTCCAGATGATTTAAGTATCTTGTACTCAAACAGAGCAGCGTGTTACTTAAAAGAAGGCAACTGCAGTGACTGTGTTCAAGATTGTAACAG
Seq C2 exon
AGCTCTGGAGCTTCAGCCATTTTCCCTTAAGCCTCTTCTACGACGAGCAATGGCATATGAGTCTATGGAGCGGTATCGACAGGCATATGTTGATTACAAAACAGTCCTACAAATAGACAGCAGCATACAAGTAGCAAATGACAGTGTTAATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016037-'13-15,'13-14,14-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.194 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134141=TPR_11=FE(46.1=100)
A:
PF134141=TPR_11=FE(43.4=100)
C2:
PF134141=TPR_11=PD(7.9=11.5),PF0051523=TPR_1=WD(100=61.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTGCAAAACTGAAAAGCGA
R:
TTGCTACTTGTATGCTGCTGTCT
Band lengths:
242-342
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]