DreEX0074615 @ danRer10
Exon Skipping
Gene
ENSDARG00000004017 | spag1a
Description
sperm associated antigen 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9443]
Coordinates
chr19:12065986-12073677:+
Coord C1 exon
chr19:12065986-12066481
Coord A exon
chr19:12068411-12068510
Coord C2 exon
chr19:12073525-12073677
Length
100 bp
Sequences
Splice sites
3' ss Seq
TGCTGCGTTTGTATTCGCAGGTA
3' ss Score
9.61
5' ss Seq
CAGGTTCAT
5' ss Score
3.89
Exon sequences
Seq C1 exon
CGGAGACCCCTCCTCCCAGTGATGTCACAGCAGGAGGTGTGTCCTCTGAATCTGTTTCAATCTGCGCAGGGAACAGGAAGAGTGTGCATGAGAGTGTGTGTGTGTGAGAGAGGACGAGAGCTCGCTGTACTGTATCGGGCAGCCATGGGCAATGCACAGAAGAAGGGCCCCGGTTACAGAGAAGGAGGGGGCCCAAACTCTCAACCCGGGACACCGGGACGCAGGAGAAGCCATGGACTAAATAACGCAGCCAACTCGAAGGAAGTCCCAGGCAGCAGCCCGGCAGCGAATGGCAGCCTTCCAGCCGGCAAGAGCCAGGATGAGCCTCAGGGACCCGGATCTGCTGGGGAAAGCTGTAATCTGGACGCCCCGTGTGGAGCCCTTCCTCCTCCACTAGCCCGGCTCAAAAACCAGGGCAATATGTTGTTCAAGAATGGACAGTTTGGGGACGCGCTGGAGAAATACACACAGGCCATTGACGGATGTATAGAAGCTG
Seq A exon
GTATCGACAGCCCAGAGGATCTCTGTGTTCTGTACTCCAACAGAGCTGCGTGCTTCCTCAAAGATGGAAACAGCGCAGACTGCATTCAGGACTGCACCAG
Seq C2 exon
GGCGCTGGAGCTCCACCCCTTCTCGCTGAAGCCCCTCCTCCGGCGAGCGATGGCCTATGAGTCTCTGGAGCGCTACAGGAAAGCCTATGTGGATTACAAAACAGTGCTGCAGATTGACATCAGTGTGCAGGCCGCTCACGACAGTGTACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000004017-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.482 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PU(46.7=21.1)
A:
PF134141=TPR_11=FE(44.0=100)
C2:
PF134141=TPR_11=PD(8.0=11.5),PF0051523=TPR_1=WD(100=59.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCCCTTCCTCCTCCACTAG
R:
GGCCTGCACACTGATGTCAAT
Band lengths:
253-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]