MmuEX6053256 @ mm9
Exon Skipping
Gene
ENSMUSG00000037617 | Spag1
Description
sperm associated antigen 1 [Source:MGI Symbol;Acc:MGI:1349387]
Coordinates
chr15:36140298-36146074:+
Coord C1 exon
chr15:36140298-36140576
Coord A exon
chr15:36140855-36140954
Coord C2 exon
chr15:36145922-36146074
Length
100 bp
Sequences
Splice sites
3' ss Seq
TTAATTAAATGTGGTTTTAGGAA
3' ss Score
7.13
5' ss Seq
CAGGTAAAC
5' ss Score
7.82
Exon sequences
Seq C1 exon
CGGCCATGGGCAACATTCAGAAGAAGCTGATGGTCCGCCGGAGCGAGGGTGGCAGGCGGTCGCGGCGGGGCCGGACACCGGGGCCCCGAGCTGAGCAGCAGGGAGGCCTGCGAGAGACAGCGACGGCCAGCACCGGCGACAGTCACTACCCGGAGGAGCCGCGAGCCGCTGACAACCCCAGCGGCCTCAAGAGACGGGGCAACGAGCTGTTCCGCGGCGGGCAATTCGCAGAGGCAGCCGCGCAATACTCGGTGGCGATAGCGCAGCTGGAACCCACAG
Seq A exon
GAAGTGCAAATGCGGATGAGCTAAGCATCTTGTATTCAAATAGAGCGGCATGCTACCTCAAAGAAGGGAACTGCAGGGACTGCATCCAGGATTGTAACAG
Seq C2 exon
GGCTCTGGAACTTCATCCGTTCTCAGTGAAGCCTCTTCTGCGGCGAGCAATGGCCTATGAGACCTTAGAGCAATACAGGAACGCATATGTGGACTATAAAACAGTGCTGCAGATAGATTGTGGGATCCAGCTGGCGAGCGACAGTGCTAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000037617-'12-13,'12-12,13-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.745 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PU(47.4=38.3)
A:
PF134141=TPR_11=FE(43.4=100)
C2:
PF134141=TPR_11=PD(7.9=11.5),PF0051523=TPR_1=WD(100=59.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGGCCTGCGAGAGACA
R:
GGTCTCATAGGCCATTGCTCG
Band lengths:
242-342
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: