RnoEX6032024 @ rn6
Exon Skipping
Gene
ENSRNOG00000010078 | Spag1
Description
sperm associated antigen 1 [Source:RGD Symbol;Acc:1310702]
Coordinates
chr7:75034867-75040493:+
Coord C1 exon
chr7:75034867-75035142
Coord A exon
chr7:75035427-75035526
Coord C2 exon
chr7:75040341-75040493
Length
100 bp
Sequences
Splice sites
3' ss Seq
TTAATTAAATGTGGTTTTAGGAA
3' ss Score
7.13
5' ss Seq
CAGGTAAAC
5' ss Score
7.82
Exon sequences
Seq C1 exon
CGGCCATGGGCAACATCCAGAAGAAGCTGATGGTTCGGAGCCAGGGTGGCAGGCGGTCGCGGCGGGCCCGGACACCGATGCCCGGAGCGGAGCAGCAGGAAGGCCAGCCAGAGACAGGGACGGCCAGTACCAGCGACAACCACGACCTGGAGGAGCGGCGAGCCGCAGACAGTCCCGGCGACCTCAAGAGCCGCGGCAACGAGCTGTTCCGCGGTGGGCAGTTCGCTGAGGCAGCCGTACAGTACTCAGGGGCGATAGCGCAGCTGGAACCCACAG
Seq A exon
GAAGTGAAAATGCGGATGAGCTAAGCATCTTGTATTCAAATAGAGCGGCGTGCTACCTCAAAGAAGGAAACTGCAGGGGCTGCATCCAGGACTGTGACAG
Seq C2 exon
GGCTCTGGAACTTCAGCCGTTCGCAGTGAAGCCTCTTTTACGGCGAGCGATGGCCTATGAGACTTTAGAGCAGTACAGGAGCGCGTATGTGGACTATATAACAGTGCTGAAGATAGACTGTAGGATCCAGCTGGCCAGCGACAGCGTTAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010078-'19-15,'19-14,21-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.806 A=0.049 C2=0.000
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PU(47.4=38.7)
A:
PF134141=TPR_11=FE(43.4=100)
C2:
PF134141=TPR_11=PD(7.9=11.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGTACCAGCGACAACCAC
R:
ATAGTCCACATACGCGCTCCT
Band lengths:
250-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]