GgaEX0026319 @ galGal3
Exon Skipping
Gene
ENSGALG00000021039 | E1BRU7_CHICK
Description
NA
Coordinates
chr6:11955464-11957494:+
Coord C1 exon
chr6:11955464-11955559
Coord A exon
chr6:11956568-11956667
Coord C2 exon
chr6:11957311-11957494
Length
100 bp
Sequences
Splice sites
3' ss Seq
GCTCACCTTCATGCTGTTAGGAC
3' ss Score
4.18
5' ss Seq
TTGGTAACT
5' ss Score
4.27
Exon sequences
Seq C1 exon
GGAATCCTTCTTTCCTGGACAAAACACTTCAAGGCCCGAGGAGTGCAGGGCACAGATGTAGTGAGCTCTCTGCGCAACGCCCTCCAGAAACATAAG
Seq A exon
GACATAGACGTCGATGTTTTGGCGATGGTCAATGACACTGTAGGCACCATGATGACCTGTGGATACGATGACCCGCGCTGTGAAATTGGACTCATAATTG
Seq C2 exon
GGACTGGCACCAACGCGTGCTACATGGAGGAGATGAGGCACATCAATTTGGTGGAAGGTGACGAAGGGAGAATGTGCATTAACACAGAGTGGGGTGCCTTTGGAGATGATGGTGCTTTGGATGACCTCCGCACAGAGTTTGATCGGGAACTCGATCTGGGGTCTCTCAATCCCGGAAAACAATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000021039-'5-5,'5-4,6-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0034916=Hexokinase_1=FE(15.0=100)
A:
PF0034916=Hexokinase_1=PD(11.2=67.6),PF0372711=Hexokinase_2=PU(3.3=23.5)
C2:
PF0372711=Hexokinase_2=FE(25.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAACACTTCAAGGCCCGAGG
R:
CGGGATTGAGAGACCCCAGAT
Band lengths:
250-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]