MmuEX6048727 @ mm9
Exon Skipping
Gene
ENSMUSG00000020080 | Hkdc1
Description
hexokinase domain containing 1 [Source:MGI Symbol;Acc:MGI:2384910]
Coordinates
chr10:61868173-61872633:-
Coord C1 exon
chr10:61872538-61872633
Coord A exon
chr10:61871363-61871462
Coord C2 exon
chr10:61868173-61868356
Length
100 bp
Sequences
Splice sites
3' ss Seq
TGAGGCCTTCTGTTCACCAGGAC
3' ss Score
7.11
5' ss Seq
TCGGTAACT
5' ss Score
6.25
Exon sequences
Seq C1 exon
GGTGTTCTGCTTTCGTGGACCAAGAAGTTCAAGGCCCGGGGAGTTCAGGACACAGACGTGGTGAACCGCCTGGCCACTGCCATGAAGAAGCACAAG
Seq A exon
GACCTGGACGTGGACATCCTGGCTTTGGTTAACGACACTGTGGGGACCATGATGACTTGTGCTTATGATGATCCCAACTGTGAAGTCGGCGTTATCATCG
Seq C2 exon
GAACAGGCACCAACGCGTGTTACATGGAGGACATGAGCAACATCGACCTCGTGGAAGGGGACGAGGGAAGGATGTGTATCAACACGGAGTGGGGGGCCTTTGGGGACGATGGGGCTTTGGAGGACATCCGCACCGAGTTTGACAGAGAGCTGGACCTGGGCTCGCTCAACCCCGGGAAGCAGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020080-'6-7,'6-6,8-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0034916=Hexokinase_1=FE(15.0=100)
A:
PF0034916=Hexokinase_1=PD(11.2=67.6),PF0372711=Hexokinase_2=PU(3.3=23.5)
C2:
PF0372711=Hexokinase_2=FE(25.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTTCTGCTTTCGTGGACCA
R:
CTCTCTGTCAAACTCGGTGCG
Band lengths:
244-344
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: