HsaEX1016871 @ hg38
Exon Skipping
Gene
ENSG00000156510 | HKDC1
Description
hexokinase domain containing 1 [Source:HGNC Symbol;Acc:HGNC:23302]
Coordinates
chr10:69239042-69243365:+
Coord C1 exon
chr10:69239042-69239137
Coord A exon
chr10:69240652-69240751
Coord C2 exon
chr10:69243182-69243365
Length
100 bp
Sequences
Splice sites
3' ss Seq
TCTGGCCTTGTGTTCGGCAGGAC
3' ss Score
8.49
5' ss Seq
TCGGTAACT
5' ss Score
6.25
Exon sequences
Seq C1 exon
GGTGTCCTACTTTCGTGGACAAAAAAGTTTAAGGCACGAGGAGTTCAGGACACGGATGTGGTGAGCCGTCTGACCAAAGCCATGAGAAGACACAAG
Seq A exon
GACATGGACGTGGACATCCTGGCCCTGGTCAATGACACCGTGGGGACCATGATGACCTGTGCCTATGACGACCCCTACTGCGAAGTTGGTGTCATCATCG
Seq C2 exon
GAACTGGCACCAATGCGTGTTACATGGAGGACATGAGCAACATTGACCTGGTGGAGGGCGACGAGGGCAGGATGTGCATCAACACAGAGTGGGGGGCCTTCGGGGACGACGGGGCCCTGGAGGACATTCGCACTGAGTTCGACAGGGAGCTGGACCTCGGCTCTCTCAACCCAGGAAAGCAACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000156510-'14-14,'14-12,16-14
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0034916=Hexokinase_1=FE(15.0=100)
A:
PF0034916=Hexokinase_1=PD(11.2=67.6),PF0372711=Hexokinase_2=PU(3.3=23.5)
C2:
PF0372711=Hexokinase_2=FE(25.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAAGGCACGAGGAGTTCAGGA
R:
GCTTTCCTGGGTTGAGAGAGC
Band lengths:
247-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains