RnoEX6062744 @ rn6
Exon Skipping
Gene
ENSRNOG00000049045 | AABR07045032.1
Description
NA
Coordinates
chr20:32038235-32040897:-
Coord C1 exon
chr20:32040802-32040897
Coord A exon
chr20:32039696-32039795
Coord C2 exon
chr20:32038235-32038418
Length
100 bp
Sequences
Splice sites
3' ss Seq
CGAGGCCTTCTGTTCACCAGGAC
3' ss Score
6.68
5' ss Seq
TTGGTAACT
5' ss Score
4.27
Exon sequences
Seq C1 exon
GGCTTCCTGCTGTCATGGACCAAGAAGTTCAAGGCCCGGGGAGTTCAGGACACAGACGTGGTGAACCGTCTGGCCACCGCCATGAAAAAGCACAAG
Seq A exon
GACCTGGACGTGGACATCCTGGCCTTGGTTAACGACACTGTGGGGACCATGATGACTTGTGCTTATGATGATCCCAACTGTGAGGTCGGCGTTATCATTG
Seq C2 exon
GAACAGGCACCAACGCGTGTTACATGGAGGACATGAGCAACATCGACCTTGTGGAAGGGGACGAGGGAAGGATGTGCATCAACACGGAGTGGGGGGCCTTCGGGGACGATGGCACTTTGGAGGACATTCGCACCGAGTTTGACAGAGAGTTGGACCTGGGCTCACTCAACCCCGGGAAGCAGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000049045-'4-5,'4-4,6-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0034916=Hexokinase_1=FE(15.0=100)
A:
PF0034916=Hexokinase_1=PD(11.2=67.6),PF0372711=Hexokinase_2=PU(3.5=23.5)
C2:
PF0372711=Hexokinase_2=FE(26.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTGCTGTCATGGACCAAGA
R:
CCCAGGTCCAACTCTCTGTCA
Band lengths:
252-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]