GgaEX0026412 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr18:7943829-7945401:-
Coord C1 exon
chr18:7945326-7945401
Coord A exon
chr18:7944574-7944668
Coord C2 exon
chr18:7943829-7943945
Length
95 bp
Sequences
Splice sites
3' ss Seq
ATTCCCCTTTCCCGTTCCAGCTG
3' ss Score
11.12
5' ss Seq
GTGGTGAGC
5' ss Score
6.64
Exon sequences
Seq C1 exon
TGTGGCCAAGGCCTTGGACCTCCAGAAGTGTTTAAAAACCCCAGCAAGGAGGCTGTCTGCTGGAGAAGCCAGGAAG
Seq A exon
CTGTGTTTTGCACTGAGCATCCTGGGAAACCCAACGGTGATGCTTTGGGATGAGCCAACAGCAGGCATGGATGTGGCAGGGCAGCGCTGTCTGTG
Seq C2 exon
GAAAGCAATCCAGGCTGCTGTGAGGAGCAAGGAGCGTGCAGCTGTGCTCAGCACGCACTGCCTGGAGGAGGCGGCGATGTGTGACCGCGTGGCTGTGCTGGTGGCGGGGCAGCTGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000021395_MULTIEX1-10/11=9-11
Average complexity
S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=FE(23.8=100)
A:
PF0000522=ABC_tran=PD(19.0=62.5)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGGCCTTGGACCTCCA
R:
CCACGCGGTCACACATCG
Band lengths:
162-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]