RnoEX0004985 @ rn6
Exon Skipping
Gene
ENSRNOG00000004147 | Abca8a
Description
ATP-binding cassette, subfamily A (ABC1), member 8a [Source:RGD Symbol;Acc:1307333]
Coordinates
chr10:98324582-98325422:-
Coord C1 exon
chr10:98325347-98325422
Coord A exon
chr10:98325158-98325252
Coord C2 exon
chr10:98324582-98324701
Length
95 bp
Sequences
Splice sites
3' ss Seq
TGCTATCCCTCTCATTGCAGCTG
3' ss Score
10.51
5' ss Seq
GTGGTGAGG
5' ss Score
6.13
Exon sequences
Seq C1 exon
GTTGGCAGATGCACTCAAGCTGCAGGACCAGCTGAAGTCTCCGGTGAAGACGCTGTCAGAGGGAGTGAAGAGAAAG
Seq A exon
CTGTGCTTTGTGCTGAGCATCCTGGGAAACCCTTCTGTGGTGCTTCTGGATGAGCCATCCACCGGGATGGACCCCGAGGGGCAGCAGCAAATGTG
Seq C2 exon
GCAGGCGATCCAGGCCACCTTCGCAAACACAGAGAGGGGCGCCCTCCTGACCACCCATTACATGGCAGAGGCTGAGGCTGTGTGTGACCGCGTGGCCATCATGGTGTCTGGGAAGCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004147_MULTIEX1-34/37=33-35
Average complexity
S
Mappability confidence:
96%=97=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.208 C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=FE(17.7=100)
A:
PF0000522=ABC_tran=PD(14.2=62.5)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCTGAAGTCTCCGGTGAAG
R:
TCAGCTTCCCAGACACCATGA
Band lengths:
167-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]