MmuEX6090862 @ mm9
Exon Skipping
Gene
ENSMUSG00000041797 | Abca9
Description
ATP-binding cassette, sub-family A (ABC1), member 9 [Source:MGI Symbol;Acc:MGI:2386796]
Coordinates
chr11:109968779-109970210:-
Coord C1 exon
chr11:109970135-109970210
Coord A exon
chr11:109969966-109970060
Coord C2 exon
chr11:109968779-109968898
Length
95 bp
Sequences
Splice sites
3' ss Seq
GTTGCCCTGTCTTCTTGCAGCTG
3' ss Score
11.48
5' ss Seq
GTGGTGAGA
5' ss Score
5.46
Exon sequences
Seq C1 exon
GTTGGTGAATGCCCTTAAACTGCAGGACCACTTGAAGGCTCTTGTCAGGACCTTGTCAGAGGGAGTGAAGAGAAAG
Seq A exon
CTGTGTTTCGTGCTGAGCATCCTGGGGAACCCTCCTGTGGTACTTCTGGATGAGCCATCGACTGGGATGGACCCCGAAGGGCAGCAGCAAATGTG
Seq C2 exon
GCAGGCGATCCGAGCCACTTTCACAAACACAGAGCGGGGCGCCCTCCTGACCACCCATTACATGGCAGAAGCAGAGGCTGTGTGTGACCGTGTGGCCATCATGGTGTCTGGGAGGCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041797-'34-33,'34-32,35-33=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.188 C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=FE(17.7=100)
A:
PF0000522=ABC_tran=PD(14.2=62.5)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCCCTTAAACTGCAGGACC
R:
CAGACACCATGATGGCCACAC
Band lengths:
178-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: