RnoEX6050318 @ rn6
Exon Skipping
Gene
ENSRNOG00000059326 | Abca9
Description
ATP binding cassette subfamily A member 9 [Source:RGD Symbol;Acc:1305931]
Coordinates
chr10:98417001-98417882:-
Coord C1 exon
chr10:98417807-98417882
Coord A exon
chr10:98417638-98417732
Coord C2 exon
chr10:98417001-98417120
Length
95 bp
Sequences
Splice sites
3' ss Seq
GTTGCCCCATCTCCTTGCAGCTT
3' ss Score
10.17
5' ss Seq
GTGGTGAGA
5' ss Score
5.46
Exon sequences
Seq C1 exon
GTTGGTGAATGCCCTCAAACTGCAGGACCAGTTGAAAGCTCTTGTCAAGACCCTGTCAGAGGGAGTGAAGAGAAAG
Seq A exon
CTTTGTTTTGTGCTGAGCATCCTGGGGAACCCTTCTGTGGTGCTGCTGGATGAGCCGTCAACTGGGATGGACCCCGAGGGGCAGCAGCAAATGTG
Seq C2 exon
GCAGGCGATCCGGGCCACTTTTACAAACACAGAGAGGGGCGCCCTCCTGACCACCCACTACATGGCAGAGGCTGAGGCTGTGTGTGACCGAGTGGCCATCATGGTGTCTGGGAGGCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000059326-'40-40,'40-39,41-40=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.156 C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=FE(17.7=100)
A:
PF0000522=ABC_tran=PD(14.2=62.5)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGCAGGACCAGTTGAAAGC
R:
CAGACACCATGATGGCCACTC
Band lengths:
168-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]