GgaEX0026412 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BSC3]
Coordinates
chr18:8208338-8209910:-
Coord C1 exon
chr18:8209835-8209910
Coord A exon
chr18:8209083-8209177
Coord C2 exon
chr18:8208338-8208454
Length
95 bp
Sequences
Splice sites
3' ss Seq
ATTCCCCTTTCCCGTTCCAGCTG
3' ss Score
11.12
5' ss Seq
GTGGTGAGC
5' ss Score
6.64
Exon sequences
Seq C1 exon
TGTGGCCAAGGCCTTGGACCTCCAGAAGTGTTTAAAAACCCCAGCAAGGAGGCTGTCTGCTGGAGAAGCCAGGAAG
Seq A exon
CTGTGTTTTGCACTGAGCATCCTGGGAAACCCAACGGTGATGCTTTGGGATGAGCCAACAGCAGGCATGGATGTGGCAGGGCAGCGCTGTCTGTG
Seq C2 exon
GAAAGCAATCCAGGCTGCTGTGAGGAGCAAGGAGCGTGCAGCTGTGCTCAGCACGCACTGCCTGGAGGAGGCGGCGATGTGTGACCGCGTGGCTGTGCTGGTGGCGGGGCAGCTGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000021395_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=FE(23.8=100)
A:
PF0000522=ABC_tran=PD(19.0=62.5)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGGCCTTGGACCTCCA
R:
CCACGCGGTCACACATCG
Band lengths:
162-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]