BtaEX0001679 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006937 | ABCA10
Description
ATP-binding cassette, sub-family A (ABC1), member 10 [Source:HGNC Symbol;Acc:HGNC:30]
Coordinates
chr19:62002538-62003637:+
Coord C1 exon
chr19:62002538-62002613
Coord A exon
chr19:62002684-62002778
Coord C2 exon
chr19:62003518-62003637
Length
95 bp
Sequences
Splice sites
3' ss Seq
GCGGCTCCTCTCTGTTGCAGCTG
3' ss Score
10.1
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
GCTGGCGGACGCGCTGAAGCTACAGGACCAGATGGCGCTCCCCGCCAAGGCCTTACCCGAGGGGGCCAAGAGAAAG
Seq A exon
CTGAGCTTCGCGCTGAGCGTCCTGGGGAGCCCGGCTCTGCTGCTCCTAGACGAGCCGACCACAGGGATGGACCCCGAGGGGCAGCTGCAGATGTG
Seq C2 exon
GCAGGCAATCCAGGCCATTGTTAAAAGCTCGGCGAGGGGCGCCCTGCTGACCACCCACTCCATGGCCGAGGCGGAGGCCGTGTGCGACCGCGTGGCCATCATGGTGTCCGGGAGGCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006937_MULTIEX2-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=FE(17.0=100)
A:
PF0000522=ABC_tran=PD(13.6=62.5)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGCTACAGGACCAGATGGC
R:
GGACACCATGATGGCCACG
Band lengths:
170-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development