HsaEX6024484 @ hg19
Exon Skipping
Gene
ENSG00000154263 | ABCA10
Description
ATP-binding cassette, sub-family A (ABC1), member 10 [Source:HGNC Symbol;Acc:30]
Coordinates
chr17:67148503-67149687:-
Coord C1 exon
chr17:67149612-67149687
Coord A exon
chr17:67149446-67149540
Coord C2 exon
chr17:67148503-67148622
Length
95 bp
Sequences
Splice sites
3' ss Seq
GGCTGTTCCTTGCATTGCAGCTG
3' ss Score
8.15
5' ss Seq
GTGGTAAGG
5' ss Score
8.37
Exon sequences
Seq C1 exon
ATTGGTGGAAGCTCTTAAGCTCCAGGAACAACTTAAGGCTCCTGTGAAAACTCTATCAGAGGGAATAAAGAGAAAG
Seq A exon
CTGTGCTTTGTGCTGAGCATCCTGGGGAACCCATCAGTGGTGCTTCTAGATGAGCCGTTCACCGGGATGGACCCCGAGGGGCAGCAGCAAATGTG
Seq C2 exon
GCAGATACTTCAGGCTACCGTTAAAAACAAGGAGAGGGGCACCCTCTTGACCACCCATTACATGTCAGAGGCTGAGGCTGTGTGTGACCGTATGGCCATGATGGTGTCAGGAACGCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000154263-'43-46,'43-45,44-46=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=FE(17.0=100)
A:
PF0000522=ABC_tran=PD(13.6=62.5)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTCCAGGAACAACTTAAGGC
R:
GACACCATCATGGCCATACGG
Band lengths:
167-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)