MmuEX7007158 @ mm10
Exon Skipping
Gene
ENSMUSG00000041828 | Abca8a
Description
ATP-binding cassette, sub-family A (ABC1), member 8a [Source:MGI Symbol;Acc:MGI:2386846]
Coordinates
chr11:110030281-110031120:-
Coord C1 exon
chr11:110031045-110031120
Coord A exon
chr11:110030860-110030954
Coord C2 exon
chr11:110030281-110030400
Length
95 bp
Sequences
Splice sites
3' ss Seq
GGCTGTCTCTCTTGTTACAGCTG
3' ss Score
9.79
5' ss Seq
GTGGTGAGG
5' ss Score
6.13
Exon sequences
Seq C1 exon
GTTGGCAGATGCGCTCAAGCTGCAGGACCAGCTGAAGTCTCCTGTGAAGACGCTGTCAGAGGGAGTGAAGAGAAAG
Seq A exon
CTGTGCTTTGTGCTGAGCATCCTGGGGAACCCTTCTGTGGTACTTCTGGATGAGCCATCCACCGGGATGGACCCCGAGGGGCAGCAGCAAATGTG
Seq C2 exon
GCAGGCTATCCAGGCCACCTTTTCAAACACAGAACGGGGCGCCCTCCTGACCACCCATTACATGGCAGAGGCTGAGGCTGTGTGTGACCGCGTGGCCATCATGGTGTCTGGGAGGCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041828-'50-53,'50-51,51-53=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.219 C2=0.005
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=FE(17.7=100)
A:
PF0000522=ABC_tran=PD(14.2=62.5)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGACCAGCTGAAGTCTCCTG
R:
AGCCTCCCAGACACCATGATG
Band lengths:
170-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types