GgaEX0027050 @ galGal3
Exon Skipping
Gene
ENSGALG00000007000 | NR2F2
Description
NA
Coordinates
chr10:17661350-17668601:+
Coord C1 exon
chr10:17661350-17661877
Coord A exon
chr10:17662530-17662669
Coord C2 exon
chr10:17665650-17668601
Length
140 bp
Sequences
Splice sites
3' ss Seq
GCAGCCGCCGGCCTCCACGCTTC
3' ss Score
-11.93
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
ACAGCCAACTCACGGTCAGTTCGCCTTGACAAACGGGGACCCTCTCAACTGCCATTCCTACCTATCCGGATATATCTCCCTTCTTCTGAGAGCAGAGCCCTACCCCACCTCCCGCTTTGGCAGTCAGTGCATGCAACCCAACAACATCATGGGCATCGAGAACATTTGCGAACTGGCAGCTCGGATGCTCTTCAGCGCGGTCGAGTGGGCCCGCAACATCCCCTTCTTCCCCGACCTGCAGATCACCGACCAGGTGGCCCTGCTGCGGCTCACCTGGAGCGAGCTCTTCGTGCTGAACGCGGCGCAGTGCTCCATGCCGCTGCACGTGGCCCCGCTGCTGGCCGCCGCCGGCCTCCACGCCTCCCCCATGTCGGCCGACCGCGTCGTCGCCTTCATGGACCACATCCGCATCTTCCAGGAGCAGGTGGAGAAGCTGAAGGCGCTGCACGTCGACTCGGCCGAGTACAGCTGCCTCAAAGCCATCGTCCTCTTCACCTCAG
Seq A exon
TTCGCCAATGTCTGCTGACCGAGTGGTCGCCTTTATGGACCACATACGAATCTTCCAAGAGCAAGTAGAAAAACTGAAAGCGTTGCATGTCGACTCCGCAGAATATAGCTGTTTAAAGGCCATAGTCCTCTTCACCTCAG
Seq C2 exon
ATGCCTGTGGTCTCTCTGATGTAGCCCATGTTGAAAGTTTACAGGAGAAGTCACAGTGTGCTTTGGAAGAGTATGTTAGGAGCCAGTATCCCAACCAGCCAACACGATTCGGGAAGCTATTACTACGTCTCCCCTCCCTTCGCACTGTCTCCTCTTCTGTCATAGAGCAATTGTTTTTCGTCCGTTTGGTAGGTAAAACCCCCATAGAAACCCTAATCAGGGATATGTTACTGTCTGGCAGCAGTTTTAACTGGCCTTACATGTCCATTCAATAAAATATTCGAGAGAGAGAGAGAGAGAGAGAGAGAAAATAAAAAGAAAAAGAAAATACAAATTGAGAAGGGAGATGAGAGTGAAAGGAAAGCAAATGACATTTGGGTTCTGGTTGTTTCTTAAATTTCCTTCTGCTAAGAAAGGATGTAAAAGGATGTTACAAAGTTTGCAAAGTGAAGACAGGGGAAAAAAATCATTAATGGACTGTGAATTTAAAAAAAAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007000_CASSETTE1
Average complexity
S*
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0010425=Hormone_recep=PU(67.3=74.6)
A:
PF0010425=Hormone_recep=PD(5.0=30.4)
C2:
PF0010425=Hormone_recep=PD(32.1=68.5)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTTCCAGGAGCAGGTGGAG
R:
ACAGAAGAGGAGACAGTGCGA
Band lengths:
251-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]