GgaEX0028264 @ galGal3
Exon Skipping
Gene
ENSGALG00000000478 | TANC2
Description
NA
Coordinates
chr27:2438147-2466497:+
Coord C1 exon
chr27:2438147-2438326
Coord A exon
chr27:2455383-2455493
Coord C2 exon
chr27:2466349-2466497
Length
111 bp
Sequences
Splice sites
3' ss Seq
CTCCCCCTCCTTCTCCTTAGCCC
3' ss Score
9.28
5' ss Seq
CTGGTAAGC
5' ss Score
8.69
Exon sequences
Seq C1 exon
GCACCTCCACAGAGAACGACTGTGCTTTCGAAGCAGACTACGCCATCCCGCCGCTCCCCGTGACCGAAGGTATGCAGCAGTTTCGGATTATGGAGGGCATGTCCCGCTCCCTTCCATCCTCCCCCTTACTCACACATCAGTCTATCAGTGTTCGGCTCCAACCCGTGAAGAAGTTGCCTG
Seq A exon
CCCCTCTGAGGAAAGCAAAGTTTGTTGAGAGCCCTCGCATCCCTGAGTCCGAGCTCGGCTCACCAACACTCTCTTCAGCACAGAAACTGGACGTGGATGCGTACTGCCCTG
Seq C2 exon
GTGACGCTGAGCAGGAGCTGGGACCCCCTCCATCCGTAGATGAGGCAGCAAATACACTCATGACTCGCCTGGGCTTCCTCCTGGGGGAGAAAGTCACGGAGGTACAGCCAGGGCCCCAGTACAGCATGGAGGTGCAGGACGAGAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000478_CASSETTE3
Average complexity
S
Mappability confidence:
NA
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.918
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCGAAGCAGACTACGCCATC
R:
TACCTCCGTGACTTTCTCCCC
Band lengths:
258-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]