MmuEX1025468 @ mm10
Exon Skipping
Gene
ENSMUSG00000053580 | Tanc2
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 [Source:MGI Symbol;Acc:MGI:2444121]
Coordinates
chr11:105713382-105776954:+
Coord C1 exon
chr11:105713382-105713564
Coord A exon
chr11:105758922-105759032
Coord C2 exon
chr11:105776806-105776954
Length
111 bp
Sequences
Splice sites
3' ss Seq
CTCTTTCTTTTTGTCCTTAGCCC
3' ss Score
9.66
5' ss Seq
CTGGTAAGC
5' ss Score
8.69
Exon sequences
Seq C1 exon
GTGGCATCTCCACAGAAAGCGATTGTGCTTTTGAGCCAGACTATGCTGTTCCACCACTTCCAGTGAGTGAAGGTATGCAGCACATTCGGATTATGGAGGGCATGTCTCGCTCTCTTCCATCCTCCCCCTTACTCACACATCAGTCTATCAGTGTTCGGCTCCAACCTGTGAAGAAGTTAACTG
Seq A exon
CCCCTCTGAGGAAGGCAAAGTTTGTTGAGAGCCCACGAATTCCAGAGTCCGAGCTTGGCTCCCCAACCCTCACTTCAGCTCAGAAACTGGACGTGGATGCATACTGCCCTG
Seq C2 exon
GTGATGTTGAACAAGAACTTGGCCCACCTCCATCTGTAGATGAGGCAGCAAACACACTCATGACTCGTCTGGGTTTCCTCCTTGGAGAGAAAGTCACAGAAGTACAACCAAGTGACCAATATAGCATGGAGGTACAGGATGAAAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000053580_MULTIEX1-3/3=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.917 A=0.816 C2=0.896
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGATTGTGCTTTTGAGCCAG
R:
AGGAGGAAACCCAGACGAGTC
Band lengths:
247-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types