GgaEX0028264 @ galGal4
Exon Skipping
Description
NA
Coordinates
chr27:2526387-2552152:+
Coord C1 exon
chr27:2526387-2526566
Coord A exon
chr27:2541038-2541148
Coord C2 exon
chr27:2552004-2552152
Length
111 bp
Sequences
Splice sites
3' ss Seq
CTCCCCCTCCTTCTCCTTAGCCC
3' ss Score
9.28
5' ss Seq
CTGGTAAGC
5' ss Score
8.69
Exon sequences
Seq C1 exon
GCACCTCCACAGAGAACGACTGTGCTTTCGAAGCAGACTACGCCATCCCGCCGCTCCCCGTGACCGAAGGTATGCAGCAGTTTCGGATTATGGAGGGCATGTCCCGCTCCCTTCCATCCTCCCCCTTACTCACACATCAGTCTATCAGTGTTCGGCTCCAACCCGTGAAGAAGTTGCCTG
Seq A exon
CCCCTCTGAGGAAAGCAAAGTTTGTTGAGAGCCCTCGCATCCCTGAGTCCGAGCTCGGCTCACCAACACTCTCTTCAGCACAGAAACTGGACGTGGATGCGTACTGCCCTG
Seq C2 exon
GTGACGCTGAGCAGGAGCTGGGACCCCCTCCATCCGTAGATGAGGCAGCAAATACACTCATGACTCGCCTGGGCTTCCTCCTGGGGGAGAAAGTCACGGAGGTACAGCCAGGGCCCCAGTACAGCATGGAGGTGCAGGACGAGAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000478_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCGAAGCAGACTACGCCATC
R:
TACCTCCGTGACTTTCTCCCC
Band lengths:
258-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]