GgaEX1000552 @ galGal4
Exon Skipping
Description
NA
Coordinates
chr23:4313185-4314319:-
Coord C1 exon
chr23:4314204-4314319
Coord A exon
chr23:4313810-4314082
Coord C2 exon
chr23:4313185-4313335
Length
273 bp
Sequences
Splice sites
3' ss Seq
CTTGTTTTGCTCTTCTGCAGAAT
3' ss Score
10.62
5' ss Seq
AAGGTAATA
5' ss Score
8.49
Exon sequences
Seq C1 exon
GTGTTCAAGTTCAGTGCAACAGCTGTAAAACTTCAGCCAACCCTCAGTATCACTTGGCTATGTCAGATGGGAGCGTACGCAATTTCTGCAGCTACAACTGTGTGGTAGCTTTTCAG
Seq A exon
AATTTGTTCAACAAACCTGCAGGAGTGAACTCCTCGGTCGTACCCCTGTCGCAAGGTCAAGTCATTGTAAGCATTCCCTCGGGGACAACGGTGTCAGCAGGTGGCACCACCTCCACTGCATCTCCCAGCTCCGGGAGCAGTTCAGCTGCAGCTGGTCTACAGAGGCTGGCTGCCCAGTCCCAGCAAGTCACTTTTGCCCGCAAGGTTGTAAAACTCTGGTGTCAGCACTGTAACAGATTATTTGCAACCAAACCAGAACTGCTTGACTTCAAG
Seq C2 exon
GGTAAAATGTTCCAGTTTTGTGGGAAGACCTGCTGTGATGAATATAAGAAGAGGAGGAGTGTAACAGCACTGTGTGAATATTGCAGAACTGAGAAGATCATCAAGGAGACAGTGCGAATCGCAGGCATAGATAAGCCATTCTGTAGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002499_MULTIEX1-12/24=11-13
Average complexity
S
Mappability confidence:
94%=100=94%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.077 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF064679=zf-FCS=PU(60.0=26.4)
C2:
PF064679=zf-FCS=PD(35.0=27.5),PF064679=zf-FCS=PU(85.0=66.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTTCAAGTTCAGTGCAACAGC
R:
ACAGAATGGCTTATCTATGCCTGC
Band lengths:
260-533
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]