RnoEX0102061 @ rn6
Exon Skipping
Gene
ENSRNOG00000012397 | Zmym4
Description
zinc finger MYM-type containing 4 [Source:RGD Symbol;Acc:1309545]
Coordinates
chr5:144918829-144924533:-
Coord C1 exon
chr5:144924321-144924533
Coord A exon
chr5:144919412-144919690
Coord C2 exon
chr5:144918829-144918979
Length
279 bp
Sequences
Splice sites
3' ss Seq
TATTGTCTTACTTTTTTCAGAAC
3' ss Score
9.12
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
ATTCGACATGAAGTTAATTACCAGAACGTGGTTCATAAGCTCTGCAGTGATGCCTGTTTCTCTAAGTTCCGCTCTGCTAACAACCTCACTATGAACTGTTGTGAGAACTGTGGGGGTTACTGCTATAGTGGCTCTGGACAGTGCCATGTGCTTCAGATTGAGGGACAGTCTAAGAAGTTTTGTAGTTCAATGTGTGTCACCTCATACAAGCAG
Seq A exon
AACTTGTTTAACAAACCAACTGGAATGAATTCTTCAGTAGTGCCCTTGTCTCAGGGCCAGGTGATCGTGAGCATCCCCACTGGTTCATCAGCATCCGCAGGGGGAGGGAGTACCCCAGCTGCCTCCCCCACCTCTGTCCACAGCTCCTCTGCGGCTGCTGGGCTCCAGAGGCTGGCTGCCCAGTCCCAGCATGTTGGCTTTGCACGAAGTGTGGTGAAGCTTAGGTGTCAACATTGTAACCGTCTCTTTGCCACAAAGCCAGAGCTTCTTGACTACAAG
Seq C2 exon
GGTAAAATGTTTCAGTTCTGTGGCAAGAATTGTTCTGATGAATATAAGAAAATCAATAATGTAATGGCAATGTGTGAATACTGTAAAATTGAGAAAATTATAAAGGAGACTGTGAGGTTCTCAGGTGCTGACAAGTCATTTTGTAGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012397_MULTIEX3-3/3=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.075 C2=0.000
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PD(55.0=31.0),PF064679=zf-FCS=WD(100=62.0)
A:
PF064679=zf-FCS=PU(61.0=26.9)
C2:
PF064679=zf-FCS=PD(34.1=27.5),PF064679=zf-FCS=PU(85.0=66.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCTGCAGTGATGCCTGTTT
R:
TCAGCACCTGAGAACCTCACA
Band lengths:
306-585
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]