HsaEX6029942 @ hg38
Exon Skipping
Gene
ENSG00000146463 | ZMYM4
Description
zinc finger MYM-type containing 4 [Source:HGNC Symbol;Acc:HGNC:13055]
Coordinates
chr1:35386074-35387604:+
Coord C1 exon
chr1:35386074-35386189
Coord A exon
chr1:35387003-35387278
Coord C2 exon
chr1:35387454-35387604
Length
276 bp
Sequences
Splice sites
3' ss Seq
TTGTTGTTTTGTTTTTCCAGAAT
3' ss Score
9.84
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
GTGTACAAGTTCAGTGTAACAGTTGTAAAACCTCAGCAATTCCTCAGTATCACCTAGCCATGTCAGATGGAAGTATACGCAACTTCTGCAGCTACAGCTGTGTGGTAGCTTTCCAG
Seq A exon
AATTTATTCAACAAACCAACTGGAATGAATTCTTCAGTAGTGCCCTTGTCTCAGGGCCAAGTAATTGTAAGCATCCCCACAGGTTCCACAGTGTCAGCCGGAGGAGGTAGCACATCTGCTGTTTCTCCCACCTCCATCAGTAGCTCTGCTGCAGCTGGTCTCCAGCGTCTCGCTGCCCAGTCCCAGCATGTTGGGTTTGCACGAAGTGTTGTGAAACTCAAATGTCAACACTGTAACCGTCTTTTTGCCACAAAACCAGAACTTCTTGACTATAAG
Seq C2 exon
GGCAAAATGTTTCAGTTCTGTGGCAAGAATTGTTCTGATGAATATAAGAAAATAAATAATGTAATGGCAATGTGTGAATATTGTAAAATTGAGAAAATTGTAAAGGAGACTGTTCGGTTCTCAGGTGCTGACAAGTCATTCTGTAGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000146463-'57-44,'57-42,58-44=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF064679=zf-FCS=PU(61.0=27.2)
C2:
PF064679=zf-FCS=PD(34.1=27.5),PF064679=zf-FCS=PU(85.0=66.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTACAAGTTCAGTGTAACAGTTGT
R:
ACAGAATGACTTGTCAGCACCTG
Band lengths:
260-536
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains