MmuEX6096138 @ mm9
Exon Skipping
Gene
ENSMUSG00000042446 | Zmym4
Description
zinc finger, MYM-type 4 [Source:MGI Symbol;Acc:MGI:1915035]
Coordinates
chr4:126582523-126588246:-
Coord C1 exon
chr4:126588034-126588246
Coord A exon
chr4:126583116-126583391
Coord C2 exon
chr4:126582523-126582673
Length
276 bp
Sequences
Splice sites
3' ss Seq
TATTGTTTTACTTTTTTCAGAAT
3' ss Score
8.62
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
ATTCGACATGAAGTTAATTACCAGAACGTGGTTCATAAGCTCTGCAGTGATGCCTGTTTTTCGAAGTTTCGCTCTGCTAACAACCTCACTATGAACTGTTGTGAGAACTGTGGGGGTTACTGTTATAGTGGCTCTGGACAGTGCCATGTGCTGCAAATTGAGGGGCAGTCTAAGAAGTTTTGTAGTTCAATGTGTGTCACCTCATACAAGCAG
Seq A exon
AATTTGTTTAACAAACCAACTGGAATGAATTCTTCAGTAGTGCCCTTGTCTCAGGGCCAGGTAATCGTGAGCATCCCCACAGGTTCATCAGCATCTGCAGGTGGAGGGAGTACACCCGCTGTGTCCCCCACCTCGATCAACAGCTCCGCTGCTGCTGGGCTCCAGAGGTTGGCTGCCCAGTCCCAGCATGTTGGGTTTGCCCGAAGTGTGGTGAAGCTTAGGTGTCAACATTGTAACCGTCTTTTTGCCACAAAGCCAGAGCTTCTTGACTACAAG
Seq C2 exon
GGTAAAATGTTTCAGTTCTGTGGCAAGAATTGTTGTGATGAATATAAGAAAATCAATAATGTAATGGCAATGTGTGAATACTGTAAAATTGAGAAAATTATAAAGGAGACTGTGAGGTTCTCAGGTGCTGACAAGTCATTTTGTAGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042446-'17-19,'17-18,21-19=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PD(55.0=31.0),PF064679=zf-FCS=WD(100=62.0)
A:
PF064679=zf-FCS=PU(61.0=27.2)
C2:
PF064679=zf-FCS=PD(34.1=27.5),PF064679=zf-FCS=PU(85.0=66.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCTGCAGTGATGCCTGTTT
R:
TCAGCACCTGAGAACCTCACA
Band lengths:
306-582
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: