GgaEX1000558 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr23:4677574-4678754:-
Coord C1 exon
chr23:4678610-4678754
Coord A exon
chr23:4678088-4678206
Coord C2 exon
chr23:4677574-4677745
Length
119 bp
Sequences
Splice sites
3' ss Seq
TTTTGTTTTTAATATAACAGAAG
3' ss Score
5.6
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
Exon sequences
Seq C1 exon
GCTAGTACTCAGACAGATGCCCTAAAACTGCCATCTTCACAGCCACCTAGGCTCCTAAAAAACAAAGCATTGTTGTGCAAGCCAATCACGCAGACTAAGGCCACCTCATGCAAACCTCATACACAAAATAAAGAATGCCAGACAG
Seq A exon
AAGAAGAAGAAGTTCAACCCAAAATCATTGTGGTACCTGTTCCTGTACCAGTGTTTGTGCCAGTACCCCTTCACCTCTACACTCAGTACACACCAGTTCCGCTTGGGATGCCAGTACCT
Seq C2 exon
GTACCCGTTCCCATGCTTTTCCCAACTACTTTGGATAATGCTGATAAGATCCTTGAAACAATTCAGGATATCAAAGAAAAGATTCCCATAAGTCCATTTGAAGCAGATCTCCTTCAGATGGCAGAAATGATTGCAGAAGATGAGGAGAAAGACAAAACACACTCTCATGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002499-'23-25,'23-24,24-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.544 A=0.117 C2=0.362
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTGCCATCTTCACAGCCAC
R:
TGCCATCTGAAGGAGATCTGC
Band lengths:
243-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]