RnoEX0102063 @ rn6
Exon Skipping
Gene
ENSRNOG00000012397 | Zmym4
Description
zinc finger MYM-type containing 4 [Source:RGD Symbol;Acc:1309545]
Coordinates
chr5:144907590-144913450:-
Coord C1 exon
chr5:144913306-144913450
Coord A exon
chr5:144910322-144910440
Coord C2 exon
chr5:144907590-144907761
Length
119 bp
Sequences
Splice sites
3' ss Seq
GTCTGTGCTTTTTTCATTAGAAG
3' ss Score
6.88
5' ss Seq
CCCGTGAGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
GCAAGTACTCAAACAGATGCCCTGAAACTTCCACCTTCCCAGCCTCCAAGGCTTTTGAAGAACAAAGCTTTATTGTGCAAACCCATCACACAGACTAAAGCCACCTCATGCAAACCACATACTCAAAACAAAGAATGCCAGACAG
Seq A exon
AAGACACTCCAAGTGAGCCCCAGGTTATGGTGGTGCCAGTCCCTGTGCCAGTGTTTGTTCCCATACCTCTTCATCTTTACACCCAGTACACTCCTGTCCCCTTTGGGATTCCAGTTCCC
Seq C2 exon
ATGCCTGTTCCCATGTTTATTCCATCCTCTATGAACAATGAAGAGAAAGCCTCTGAGGGCATTGAAGACATTAAAGAGAAACTTGCCACACATCCATTTGAGGCAGATCTCCTTGAGATGGCAGAAATGATTGCAGAAGATGAAGAGAAGGAAAAGACTTTATCCCAGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012397_MULTIEX4-2/4=1-3
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.531 A=0.205 C2=0.810
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAACTTCCACCTTCCCAGCC
R:
GCCATCTCAAGGAGATCTGCC
Band lengths:
244-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]