HsaEX6029940 @ hg38
Exon Skipping
Gene
ENSG00000146463 | ZMYM4
Description
zinc finger MYM-type containing 4 [Source:HGNC Symbol;Acc:HGNC:13055]
Coordinates
chr1:35393595-35397545:+
Coord C1 exon
chr1:35393595-35393739
Coord A exon
chr1:35396552-35396670
Coord C2 exon
chr1:35397377-35397545
Length
119 bp
Sequences
Splice sites
3' ss Seq
TTTGTTGTTGTTACTGTTAGAAG
3' ss Score
3.75
5' ss Seq
CCAGTGAGT
5' ss Score
8.28
Exon sequences
Seq C1 exon
GCAAGTACTCAAACAGATGCCCTGAAACTGCCACCTTCCCAACCTCCAAGGCTTTTGAAGAACAAAGCTTTATTATGCAAACCCATCACACAGACTAAAGCCACCTCTTGCAAACCACATACCCAAAACAAAGAATGCCAGACAG
Seq A exon
AAGACACTCCAAGTCAGCCCCAGATTATTGTGGTGCCAGTTCCCGTACCAGTGTTTGTTCCCATACCTCTTCACCTTTATACTCAATATGCTCCAGTCCCATTTGGAATTCCAGTTCCA
Seq C2 exon
ATGCCTGTCCCTATGCTTATTCCATCTTCAATGGATAGTGAAGATAAAGTCACAGAGAGTATTGAAGACATTAAAGAAAAGCTTCCCACACATCCATTTGAAGCTGATCTCCTTGAGATGGCAGAAATGATTGCAGAAGATGAAGAGAAGAAGACTCTATCTCAGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000146463-'68-60,'68-57,69-60
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.526 A=0.160 C2=0.901
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAACTGCCACCTTCCCAAC
R:
TGCCATCTCAAGGAGATCAGC
Band lengths:
246-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains