HsaEX6029940 @ hg19
Exon Skipping
Gene
ENSG00000146463 | ZMYM4
Description
zinc finger, MYM-type 4 [Source:HGNC Symbol;Acc:13055]
Coordinates
chr1:35859196-35863146:+
Coord C1 exon
chr1:35859196-35859340
Coord A exon
chr1:35862153-35862271
Coord C2 exon
chr1:35862978-35863146
Length
119 bp
Sequences
Splice sites
3' ss Seq
TTTGTTGTTGTTACTGTTAGAAG
3' ss Score
3.75
5' ss Seq
CCAGTGAGT
5' ss Score
8.28
Exon sequences
Seq C1 exon
GCAAGTACTCAAACAGATGCCCTGAAACTGCCACCTTCCCAACCTCCAAGGCTTTTGAAGAACAAAGCTTTATTATGCAAACCCATCACACAGACTAAAGCCACCTCTTGCAAACCACATACCCAAAACAAAGAATGCCAGACAG
Seq A exon
AAGACACTCCAAGTCAGCCCCAGATTATTGTGGTGCCAGTTCCCGTACCAGTGTTTGTTCCCATACCTCTTCACCTTTATACTCAATATGCTCCAGTCCCATTTGGAATTCCAGTTCCA
Seq C2 exon
ATGCCTGTCCCTATGCTTATTCCATCTTCAATGGATAGTGAAGATAAAGTCACAGAGAGTATTGAAGACATTAAAGAAAAGCTTCCCACACATCCATTTGAAGCTGATCTCCTTGAGATGGCAGAAATGATTGCAGAAGATGAAGAGAAGAAGACTCTATCTCAGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000146463-'32-37,'32-34,33-37=AN
Average complexity
A_S
Mappability confidence:
89%=75=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.526 A=0.160 C2=0.901
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAACTGCCACCTTCCCAAC
R:
TGCCATCTCAAGGAGATCAGC
Band lengths:
246-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)