BtaEX6019003 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021023 | ZMYM4
Description
zinc finger, MYM-type 4 [Source:HGNC Symbol;Acc:HGNC:13055]
Coordinates
chr3:110956806-110964220:-
Coord C1 exon
chr3:110964076-110964220
Coord A exon
chr3:110957678-110957796
Coord C2 exon
chr3:110956806-110956977
Length
119 bp
Sequences
Splice sites
3' ss Seq
TTTATTTTTGTTTTTATTAGAAG
3' ss Score
6.96
5' ss Seq
CCAGTGAGT
5' ss Score
8.28
Exon sequences
Seq C1 exon
GCAAGTACACAAACAGATGTCCTAAAACTGCCACCTTCCCAGCCTCCAAGACTTCTGAAGAATAAAGCTTTATTGTGCAAACCCATCACACAGACCAAGGCCACCTCTTGCAAACCACATACACAAAACAAAGAATGCCAGACAG
Seq A exon
AAGACACTCCAGCTCAGCCCCAAATTATTGCGGTGCCAGTTCCAGTACCAGTGTTTGTACCTGTACCTCTTCATCTTTATACTCAGTATGCACCAGTCCCATTTGGAATTCCAGTTCCA
Seq C2 exon
ATGCCTGTCCCTATGCTTATTCCATCCTCAATGGGTAACGAAGATAAAGTCACTGAGAGTATTGAGGACATTAAGGAAAAGCTTCCCTCACATCCTTTTGAAGCTGATCTCCTTGAAATGGCAGAAATGATTGCAGAAGATGAGGAGAAGGAGAAGACTCTATCTCAGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021023-'20-24,'20-22,22-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.531 A=0.200 C2=0.914
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAAAACTGCCACCTTCCCAGC
R:
TGCCATTTCAAGGAGATCAGCT
Band lengths:
246-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]