DreEX0067090 @ danRer10
Exon Skipping
Gene
ENSDARG00000035821 | si:ch211-173p18.3
Description
si:ch211-173p18.3 [Source:ZFIN;Acc:ZDB-GENE-060503-672]
Coordinates
chr19:40565590-40567912:+
Coord C1 exon
chr19:40565590-40565689
Coord A exon
chr19:40565819-40565928
Coord C2 exon
chr19:40567741-40567912
Length
110 bp
Sequences
Splice sites
3' ss Seq
TGAACTCTTGTATCTTGCAGATG
3' ss Score
10.44
5' ss Seq
CCGGTACAT
5' ss Score
5.7
Exon sequences
Seq C1 exon
AAACGTAATCTGAGATCCCAAATCCTACAGAACAAATCCCCAAGCAAAAACAAATCCACAACCTGTAAACCCCACACCGCTGATGCTGAGATACAGAAAG
Seq A exon
ATGAGGCACCTAAAGTGATAGTGCTGCCTGTTCCGGTGCCAGTCTATGTGCCAGTTCCCATGAATCTCTACTCTCAATATGTTCCAAAGTCTGTTGGGATGCCCCTTCCG
Seq C2 exon
GTTCCAGTGCCCTTGTTCTTCCCCACGACTCTGGACAGCGCCGAACACATTGTACAGACCATTCAGGAAATCAAAGAGAAGATCCCTGATGATCCTCTGGAGGCCGACCTCATCATGATGGCGGAGATGGTGGCGGAGGATGCAGAGAAGGAGAAACACATCAGCTCCTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000035821-'30-39,'30-37,31-39
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.971 A=0.054 C2=0.724
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTACAGAACAAATCCCCAAGCA
R:
ACAGGAGCTGATGTGTTTCTCC
Band lengths:
248-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]