GgaEX1004117 @ galGal3
Exon Skipping
Gene
ENSGALG00000021274 | F1NJE7_CHICK
Description
NA
Coordinates
chr17:1328270-1330167:-
Coord C1 exon
chr17:1330017-1330167
Coord A exon
chr17:1329029-1329188
Coord C2 exon
chr17:1328270-1328508
Length
160 bp
Sequences
Splice sites
3' ss Seq
AACCTTTGAATCCTTCTTAGGGA
3' ss Score
6.47
5' ss Seq
AAGGTGGGA
5' ss Score
6.03
Exon sequences
Seq C1 exon
GGCCAGGCATATCAAGCTATGCCGATGATCCCCCAAAAGCTGGTGATTCCCTAAGAGAGTGCCTGGATGAAGCCCTGAAGGTCATTCCTGCTGCAAAGCAGAGGGATGTCTCAGCTTACTTCGGAGCGACAGCAGGCATGAGGCTACTGAG
Seq A exon
GGAACAGAACAGCTCAGCTGCAGACCGAGTCCTGGCCGAAATTGCTAAAACCATACAAGAGTATCCTGTGGCTTTCTGTGGGGCACAGATCATTACAGGAGAAGAGGAGGGAGCTTATGGTTGGATCACCATCAACTACCTGCTGGAGTCCTTCACCAAG
Seq C2 exon
TACTCCCCAAAAGCACACATGTGGGTCCATCCAGAGGCAGCCAACAGTTTTGGGGCGCTGGATCTTGGAGGAGCATCAACTCAGATCAGCTTTGCCCCCAAAGGTTCATTTATAAACTGGAACAAAACCTCCAGGTTCATGCTGTATGGATACAACTACAACATCTACACTCACAGCTACATCTGCTATGGGCAGAATGAGATGTGGAAGCGCCTGGCAAAGGAGTTAATTGTGGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000021274-'2-3,'2-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0115012=GDA1_CD39=FE(11.7=100)
A:
PF0115012=GDA1_CD39=FE(12.4=100)
C2:
PF0115012=GDA1_CD39=FE(18.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCTTACTTCGGAGCGACAG
R:
CAGGCGCTTCCACATCTCATT
Band lengths:
256-416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]