GgaEX1004915 @ galGal4
Exon Skipping
Description
NA
Coordinates
chr7:19022974-19030976:+
Coord C1 exon
chr7:19022974-19023426
Coord A exon
chr7:19025224-19025307
Coord C2 exon
chr7:19030859-19030976
Length
84 bp
Sequences
Splice sites
3' ss Seq
GCGTACCATTCTTCTCACAGGAG
3' ss Score
8.41
5' ss Seq
CAGGTTATC
5' ss Score
-0.23
Exon sequences
Seq C1 exon
GTATTGAACCTTTTTCTGGCCTTGCTGCTGAGTTCATTTAGTTCAGACAGCCTTTCTCCTACTGAGGATGATAATGAAATGAATAATTTACAGATAGCTGTTGCAAGAATTCAGAAGGGAATAGATTACGTGAAGGAAAAAGTAGGTGAATATATCCAAAAATCTTGCTGGAGGAAACAAATGGCTGCAAATGAAAGAACAGCAACAGATCAGTTGAATGATGAAAGACACCATTGCATTTCCAACTGTACCGTTGCTGAAATAAAGGCAGACACAACTTACCACAAAAATGAGAATGGAACAGCCGGTGTTGTAGGAAGCAGTGACTATCCACTGTTCATAAACAACCCAAGCCTTACTGTTACGGTACCGATAGCTGTTGGAGAATCTGACTTTGAACATCTAAATACAGAAGAGTTTAGTAGTGACTCAGATTTGGAGGAAAGCAAGGAG
Seq A exon
GAGTAAAATCAAGCTGGATCAGACAAGAATGCAGCTCTGGTGCTTTTTAACCAGGCAGAGCAACGTGTCAGCACGTTTACACAG
Seq C2 exon
AAGATAAATCTTTCCAGCTCATCTGAAGGAAGTACAGTTAATTTGGCTCTCTTTGGAGAAGAAAAAGCTGAGACTGAGCCAGAAAAAGCAGCAGAGCTACAGACATGTTTTACAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000027793-'12-13,'12-12,13-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.136 A=1.000 C2=0.050
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=PD(4.2=5.3),PF065128=Na_trans_assoc=PU(59.9=84.1)
A:
PF065128=Na_trans_assoc=PD(0.1=0.0)
C2:
PF065128=Na_trans_assoc=FE(18.4=100)
Main Inclusion Isoform:
ENSGALT00000017809fB4507
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGGTACCGATAGCTGTTGGA
R:
TGCTGCTTTTTCTGGCTCAGT
Band lengths:
183-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]