GgaEX1009271 @ galGal3
Exon Skipping
Gene
ENSGALG00000002040 | ARVCF
Description
NA
Coordinates
chr15:1075257-1077742:-
Coord C1 exon
chr15:1077592-1077742
Coord A exon
chr15:1076059-1076251
Coord C2 exon
chr15:1075257-1075368
Length
193 bp
Sequences
Splice sites
3' ss Seq
TATCTCTTCCACTTTTCCAGGTA
3' ss Score
10.73
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
TGGTCCACATACATTCGTGCAACAGTGAGGAAAGAGAGAGGCTTGCCAGTGCTTGTGGAGCTACTCCAGTCCGACTCTGACAAGGTTGTGAGGGCTGTTTCGATTGCCTTGAGAAACCTTTCCATGGATCGCCGCAATAAAGACCTTATAG
Seq A exon
GTAGTTATGCCATGGGTGAGCTGGTTAGAAATTTGCCCAGCAGGCAGCAGAGATCTGCAAAGAACCTGGAAGAGGATACAGTGGTTGCTGTATTGAATACAATCCATGAAATCATTACTGACAGCTCAGAAAATGCAAGGTCTCTGATCCAGACACAGGGCATTCAGAAGCTGGTGGCTATCAGCAAGTCAAG
Seq C2 exon
CCAGTCTCCTCGAGAAACAAAAGCAGCGTCTCACGTTCTTCAGATGATCTGGAGCTACAAGGAGTTACGAAATGCTTTGCAGAAAGATGGCTGGAACAAATCACACTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002040-'17-18,'17-17,18-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.185 C2=0.444
Domain overlap (PFAM):
C1:
PF0051418=Arm=WD(100=76.5)
A:
NO
C2:
PF0278111=G6PD_C=PU(31.4=69.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTCCACATACATTCGTGCA
R:
CCAGCCATCTTTCTGCAAAGC
Band lengths:
245-438
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]