DreEX6010955 @ danRer10
Exon Skipping
Gene
ENSDARG00000061688 | arvcfb
Description
armadillo repeat gene deleted in velocardiofacial syndrome b [Source:ZFIN;Acc:ZDB-GENE-060526-60]
Coordinates
chr5:25681076-25685464:-
Coord C1 exon
chr5:25685314-25685464
Coord A exon
chr5:25684023-25684215
Coord C2 exon
chr5:25681076-25681187
Length
193 bp
Sequences
Splice sites
3' ss Seq
TGTCGTATTCTCATCCTCAGGCA
3' ss Score
9.08
5' ss Seq
CAGGTGATT
5' ss Score
5.95
Exon sequences
Seq C1 exon
TGGTCAAACTATATCCGAGCGACGGTGCGTAAGGAGAAGGGGTTGCCGATCCTGGTGGAGCTCTTGCGTTCAGACTCAGACAAGGTGGTGCGAGCGGTGGCCATCGCTTTGAGGAACCTGTCTATTGACCGCCGCAACAAAGATCTCATAG
Seq A exon
GCAGTTATGCTATGAGGGACTTGGTCAGCAACCTGCCCAGTGGCCAGCAGCGGCCAGCCAAAAACCTGGAGGAAGACACAGTAGTGGCCATCCTCAACACTATCCATGAAATCATCACAGACAGCTCTGAAAATGCCCGCTCTCTCATTACTGCTCAAGCCATCGACAAACTCGTGGCCATCAACAGGACCAG
Seq C2 exon
CCAGTCGGCAAGGGAGACCAAAGCTGCTTCCCATGTTCTGCAGACGGTTTGGAGCTATAAGGAGCTGAGGAACGCCCTCACCAAGGATGGCTGGAATAAAACACACTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061688-'32-37,'32-34,35-37=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.110 C2=0.305
Domain overlap (PFAM):
C1:
PF0051418=Arm=WD(100=80.4)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCAAACTATATCCGAGCGACG
R:
ATTCCAGCCATCCTTGGTGAG
Band lengths:
247-440
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]