GgaEX1018141 @ galGal3
Exon Skipping
Gene
ENSGALG00000007330 | Q5ZJ21_CHICK
Description
NA
Coordinates
chr5:18131513-18132331:-
Coord C1 exon
chr5:18132181-18132331
Coord A exon
chr5:18131734-18131926
Coord C2 exon
chr5:18131513-18131627
Length
193 bp
Sequences
Splice sites
3' ss Seq
CGACTATTTGCCCTTATTAGGTA
3' ss Score
7.13
5' ss Seq
TGGGTAGGC
5' ss Score
6.03
Exon sequences
Seq C1 exon
TACGGCCGGTACATCCGCTCGGCACTCCGCCAGGAGAAGGGACTCTCTGCCATTGCTGACCTCCTGACTCATGACAGTGAACGTGTGGTGAAAGCAGCATCTGGAGCCCTCCGCAACCTGGCTGTTGACTTACGTAACAAAGAGCTGATAG
Seq A exon
GTAAACATGCCATCCCCAATTTAGTGAAGAACCTGCCTGGAGGCCAGCAGACTCCAGCCAAAAACCTCTCTGAGGATACAGTGGTGTCCATCCTCAATACCATCAATGAAGTCATTGTAGACAACCTTGAGGCTGCCAAGAAGTTGCGGGAAACGCAGGGGATTGAGAAGTTGGTGCTGATCAACAAAACTGG
Seq C2 exon
GAACCGCTCAGAGAGAGAAGTCCGAGCAGCTGCCGTCGTCTTGCAGACAGTCTGGGGATATAAAGAGCTACGGAAGCCCCTGGAGAAGGAAGGCTGGAAGAAGTCAGATTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007330-'20-13,'20-12,21-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.138 C2=0.162
Domain overlap (PFAM):
C1:
PF0051418=Arm=WD(100=76.5)
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTACATCCGCTCGGCACTC
R:
TTCCAGCCTTCCTTCTCCAGG
Band lengths:
242-435
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]